ReferencesΒΆ

[Michaud-Agrawal2011]N. Michaud-Agrawal, E. J. Denning, T. B. Woolf, and O. Beckstein. MDAnalysis: A Toolkit for the Analysis of Molecular Dynamics Simulations. J. Comput. Chem. 32 (2011), 2319–2327, doi:10.1002/jcc.21787 PMCID:PMC3144279
[Beckstein2009]O Beckstein. EJ Denning, JR Perilla, and TB Woolf. Zipping and Unzipping of Adenylate Kinase: Atomistic Insights into the Ensemble of Open/Closed Transitions. J Mol Biol 394 (2009), 160–176. doi:10.1016/j.jmb.2009.09.009
[Seyler2014]L. Seyler and O. Beckstein. Sampling of large conformational transitions: Adenylate kinase as a testing ground. Molec. Simul. 40 (2014), 855–877. doi: 10.1080/08927022.2014.919497.