.. -*- mode: reST; coding: utf-8 -*-

============
 References
============

.. [Michaud-Agrawal2011] N. Michaud-Agrawal, E. J. Denning,
   T. B. Woolf, and O. Beckstein.  MDAnalysis: A Toolkit for the
   Analysis of Molecular Dynamics Simulations.
   *J. Comput. Chem.* **32** (2011), 2319–2327, doi:`10.1002/jcc.21787`_
   PMCID:`PMC3144279`_

.. [Beckstein2009] O Beckstein. EJ Denning, JR Perilla, and TB
   Woolf. Zipping and Unzipping of Adenylate Kinase: Atomistic
   Insights into the Ensemble of Open/Closed Transitions. *J Mol Biol*
   **394** (2009), 160–176. doi:`10.1016/j.jmb.2009.09.009`_

.. [Seyler2014] L. Seyler and O. Beckstein. Sampling of large
   conformational transitions: Adenylate kinase as a testing
   ground. *Molec. Simul.* **40** (2014), 855–877. doi:
   `10.1080/08927022.2014.919497`_.

.. _10.1002/jcc.21787: http://doi.org/10.1002/jcc.21787
.. _PMC3144279: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3144279

.. _10.1016/j.jmb.2009.09.009: http://doi.org/10.1016/j.jmb.2009.09.009
.. _10.1080/08927022.2014.919497: http://doi.org/10.1080/08927022.2014.919497


.. Indices and tables
.. ==================

.. * :ref:`genindex`
.. * :ref:`modindex`
.. * :ref:`search`